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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
150 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1005112
SRR006907.37251
655125
Gammaproteobacteria
TTG
Gln
>SRA1005226
SRR006907.122924
653474
Gammaproteobacteria
GAC
Val
>SRA1004455
SRR006906.36170
271411
Gammaproteobacteria
GGG
Pro
>SRA1005061
SRR006906.248500
270611
Gammaproteobacteria
CCG
Arg
>SRA1004916
SRR006906.184063
270611
Gammaproteobacteria
CCG
Arg
>SRA1004689
SRR006906.103014
270611
Gammaproteobacteria
CCG
Arg
>SRA1004913
SRR006906.183334
270822
Gammaproteobacteria
CCA
Trp
>SRA1004612
SRR006906.84071
270822
Gammaproteobacteria
CCA
Trp
>SRA1004474
SRR006906.42613
153705
Gammaproteobacteria
TAA
Leu
>SRA1004499
SRR006906.51969
451622
Gammaproteobacteria
GGT
Thr
>SRA1004776
SRR006906.134549
273754
Gammaproteobacteria
GTT
Asn
>SRA1004751
SRR006906.123664
271705
Gammaproteobacteria
TGG
Pro
>SRA1004657
SRR006906.95702
271705
Gammaproteobacteria
TGG
Pro
>SRA1004915
SRR006906.183708
30307
Gammaproteobacteria
TGA
Ser
>SRA1004909
SRR006906.181083
30307
Gammaproteobacteria
TGA
Ser
>SRA1004905
SRR006906.177168
30307
Gammaproteobacteria
TGA
Ser
>SRA1004898
SRR006906.176060
30307
Gammaproteobacteria
TGA
Ser
>SRA1004769
SRR006906.131834
30307
Gammaproteobacteria
TGA
Ser
>SRA1004767
SRR006906.131745
30307
Gammaproteobacteria
TGA
Ser
>SRA1004726
SRR006906.114851
30307
Gammaproteobacteria
TGA
Ser
>SRA1004698
SRR006906.106276
30307
Gammaproteobacteria
TGA
Ser
>SRA1005055
SRR006906.245119
270662
Gammaproteobacteria
ACG
Arg
>SRA1005008
SRR006906.221290
270662
Gammaproteobacteria
ACG
Arg
>SRA1004378
SRR006906.16502
270662
Gammaproteobacteria
ACG
Arg
>SRA1004707
SRR006906.108967
275006
Gammaproteobacteria
GGG
Pro
>SRA1004641
SRR006906.93023
275006
Gammaproteobacteria
GGG
Pro
>SRA1004377
SRR006906.16502
12249
Gammaproteobacteria
GCT
Ser
>SRA1004680
SRR006906.100788
179988
Gammaproteobacteria
TAG
Leu
>SRA1004894
SRR006906.175199
180706
Gammaproteobacteria
TAG
Leu
>SRA1004803
SRR006906.142799
180706
Gammaproteobacteria
TAG
Leu
>SRA1004756
SRR006906.124788
180706
Gammaproteobacteria
TAG
Leu
>SRA1004576
SRR006906.75136
180706
Gammaproteobacteria
TAG
Leu
>SRA1004534
SRR006906.60369
72715
Gammaproteobacteria
GGA
Ser
>SRA1004405
SRR006906.22014
72715
Gammaproteobacteria
GGA
Ser
>SRA1004580
SRR006906.76299
179985
Gammaproteobacteria
>SRA1004660
SRR006906.96168
653462
Gammaproteobacteria
TTG
Gln
>SRA1004750
SRR006906.123664
452317
Gammaproteobacteria
GTG
His
>SRA1004718
SRR006906.112193
452317
Gammaproteobacteria
GTG
His
>SRA1004656
SRR006906.95702
452317
Gammaproteobacteria
GTG
His
>SRA1004717
SRR006906.112193
270872
Gammaproteobacteria
CCG
Arg
>SRA1004655
SRR006906.95702
270872
Gammaproteobacteria
CCG
Arg
>SRA1004953
SRR006906.196522
779665
Gammaproteobacteria
GCA
Cys
>SRA1004879
SRR006906.169171
779665
Gammaproteobacteria
GCA
Cys
>SRA1004838
SRR006906.158672
112362
Gammaproteobacteria
TAA
Leu
>SRA1004995
SRR006906.214894
451837
Gammaproteobacteria
TTC
Glu
>SRA1004401
SRR006906.21192
451837
Gammaproteobacteria
TTC
Glu
>SRA1004350
SRR006906.4642
451837
Gammaproteobacteria
TTC
Glu
>SRA1004889
SRR006906.173815
180480
Gammaproteobacteria
GTA
Tyr
>SRA1004570
SRR006906.71846
180480
Gammaproteobacteria
GTA
Tyr
>SRA1004724
SRR006906.114484
271658
Gammaproteobacteria
CCG
Arg
>SRA1004506
SRR006906.53677
271658
Gammaproteobacteria
CCG
Arg
>SRA1005047
SRR006906.239545
451838
Gammaproteobacteria
TAC
Val
>SRA1005037
SRR006906.235273
451838
Gammaproteobacteria
TAC
Val
>SRA1005003
SRR006906.219801
451838
Gammaproteobacteria
TAC
Val
>SRA1004945
SRR006906.192813
451838
Gammaproteobacteria
TAC
Val
>SRA1004881
SRR006906.169449
451838
Gammaproteobacteria
TAC
Val
>SRA1004832
SRR006906.155335
451838
Gammaproteobacteria
TAC
Val
>SRA1004784
SRR006906.136526
451838
Gammaproteobacteria
TAC
Val
>SRA1004552
SRR006906.66958
451838
Gammaproteobacteria
TAC
Val
>SRA1004443
SRR006906.31469
451838
Gammaproteobacteria
TAC
Val
>SRA1004794
SRR006906.138271
273872
Gammaproteobacteria
TCT
Arg
>SRA1004472
SRR006906.42039
273872
Gammaproteobacteria
TCT
Arg
>SRA1004962
SRR006906.199776
455863
Gammaproteobacteria
GAA
Phe
>SRA1004893
SRR006906.174778
281156
Gammaproteobacteria
CCT
Arg
>SRA1004695
SRR006906.105304
218592
Gammaproteobacteria
GAG
Leu
>SRA1004559
SRR006906.68441
218592
Gammaproteobacteria
GAG
Leu
>SRA1004788
SRR006906.137862
275003
Gammaproteobacteria
CAT
Met
>SRA1004883
SRR006906.170449
779598
Gammaproteobacteria
GCA
Cys
>SRA1004745
SRR006906.121284
779598
Gammaproteobacteria
GCA
Cys
>SRA1004729
SRR006906.115542
779598
Gammaproteobacteria
GCA
Cys
>SRA1004672
SRR006906.98997
779598
Gammaproteobacteria
GCA
Cys
>SRA1004901
SRR006906.176391
451785
Gammaproteobacteria
GAA
Phe
>SRA1004795
SRR006906.139082
451785
Gammaproteobacteria
GAA
Phe
>SRA1004762
SRR006906.128012
451785
Gammaproteobacteria
GAA
Phe
>SRA1004601
SRR006906.81730
451785
Gammaproteobacteria
GAA
Phe
>SRA1004799
SRR006906.140728
270666
Gammaproteobacteria
CCA
Trp
>SRA1004791
SRR006906.137997
270666
Gammaproteobacteria
CCA
Trp
>SRA1004771
SRR006906.132046
270666
Gammaproteobacteria
CCA
Trp
>SRA1004594
SRR006906.79791
270666
Gammaproteobacteria
CCA
Trp
>SRA1004543
SRR006906.63840
270666
Gammaproteobacteria
CCA
Trp
>SRA1004431
SRR006906.29849
270666
Gammaproteobacteria
CCA
Trp
>SRA1004960
SRR006906.199131
654721
Gammaproteobacteria
TTG
Gln
>SRA1004787
SRR006906.137653
654721
Gammaproteobacteria
TTG
Gln
>SRA1004733
SRR006906.117921
654721
Gammaproteobacteria
TTG
Gln
>SRA1004802
SRR006906.142799
655755
Gammaproteobacteria
TTG
Gln
>SRA1004755
SRR006906.124788
655755
Gammaproteobacteria
TTG
Gln
>SRA1004954
SRR006906.196522
451780
Gammaproteobacteria
GCC
Gly
>SRA1004880
SRR006906.169171
451780
Gammaproteobacteria
GCC
Gly
>SRA1004702
SRR006906.106479
451780
Gammaproteobacteria
GCC
Gly
>SRA1004613
SRR006906.84525
451780
Gammaproteobacteria
GCC
Gly
>SRA1004589
SRR006906.77610
451780
Gammaproteobacteria
GCC
Gly
>SRA1004560
SRR006906.68491
451780
Gammaproteobacteria
GCC
Gly
>SRA1004556
SRR006906.67437
451780
Gammaproteobacteria
GCC
Gly
>SRA1004553
SRR006906.67215
451780
Gammaproteobacteria
GCC
Gly
>SRA1004548
SRR006906.64823
451780
Gammaproteobacteria
GCC
Gly
>SRA1004955
SRR006906.197527
653554
Gammaproteobacteria
TTG
Gln
>SRA1004860
SRR006906.164724
653554
Gammaproteobacteria
TTG
Gln
>SRA1004783
SRR006906.136336
653554
Gammaproteobacteria
TTG
Gln
>SRA1004777
SRR006906.134883
653554
Gammaproteobacteria
TTG
Gln
>SRA1004621
SRR006906.87489
653554
Gammaproteobacteria
TTG
Gln
>SRA1004606
SRR006906.82607
653554
Gammaproteobacteria
TTG
Gln
>SRA1004417
SRR006906.25744
653554
Gammaproteobacteria
TTG
Gln
>SRA1004393
SRR006906.18750
653554
Gammaproteobacteria
TTG
Gln
>SRA1005048
SRR006906.239951
283315
Gammaproteobacteria
CCT
Arg
>SRA1004845
SRR006906.160875
283315
Gammaproteobacteria
CCT
Arg
>SRA1004673
SRR006906.99314
456266
Gammaproteobacteria
GCC
Gly
>SRA1004530
SRR006906.59271
451835
Gammaproteobacteria
GTT
Asn
>SRA1004541
SRR006906.63547
72921
Gammaproteobacteria
CGA
Ser
>SRA1004988
SRR006906.210913
270613
Gammaproteobacteria
TCT
Arg
>SRA1004984
SRR006906.209329
270613
Gammaproteobacteria
TCT
Arg
>SRA1004944
SRR006906.190686
270613
Gammaproteobacteria
TCT
Arg
>SRA1004942
SRR006906.190279
270613
Gammaproteobacteria
TCT
Arg
>SRA1004895
SRR006906.175357
270613
Gammaproteobacteria
TCT
Arg
>SRA1004822
SRR006906.147973
270613
Gammaproteobacteria
TCT
Arg
>SRA1004859
SRR006906.164724
114716
Gammaproteobacteria
CAG
Leu
>SRA1004620
SRR006906.87489
114716
Gammaproteobacteria
CAG
Leu
>SRA1004605
SRR006906.82607
114716
Gammaproteobacteria
CAG
Leu
>SRA1004416
SRR006906.25744
114716
Gammaproteobacteria
CAG
Leu
>SRA1004392
SRR006906.18750
114716
Gammaproteobacteria
CAG
Leu
>SRA1005016
SRR006906.224296
452407
Gammaproteobacteria
GAA
Phe
>SRA1004891
SRR006906.174124
452407
Gammaproteobacteria
GAA
Phe
>SRA1004483
SRR006906.46432
452407
Gammaproteobacteria
GAA
Phe
>SRA1004427
SRR006906.28483
182400
Gammaproteobacteria
CAA
Leu
>SRA1004821
SRR006906.147707
270618
Gammaproteobacteria
TCT
Arg
>SRA1004810
SRR006906.143930
270618
Gammaproteobacteria
TCT
Arg
>SRA1004658
SRR006906.95712
270618
Gammaproteobacteria
TCT
Arg
>SRA1004540
SRR006906.62632
270618
Gammaproteobacteria
TCT
Arg
>SRA1004402
SRR006906.21192
655179
Gammaproteobacteria
TTT
Lys
>SRA1004470
SRR006906.41424
86880
Gammaproteobacteria
GGA
Ser
>SRA1004719
SRR006906.112865
451624
Gammaproteobacteria
TAC
Val
>SRA1004627
SRR006906.88835
456268
Gammaproteobacteria
TAC
Val
>SRA1004366
SRR006906.12110
456268
Gammaproteobacteria
TAC
Val
>SRA1005032
SRR006906.233229
30308
Gammaproteobacteria
TGA
Ser
>SRA1004684
SRR006906.102094
30308
Gammaproteobacteria
TGA
Ser
>SRA1004616
SRR006906.86394
465223
Gammaproteobacteria
GGT
Thr
>SRA1005027
SRR006906.231571
456265
Gammaproteobacteria
TGT
Thr
>SRA1004888
SRR006906.173815
456265
Gammaproteobacteria
TGT
Thr
>SRA1004569
SRR006906.71846
456265
Gammaproteobacteria
TGT
Thr
>SRA1004809
SRR006906.143665
271868
Gammaproteobacteria
GAC
Val
>SRA1004546
SRR006906.64360
271868
Gammaproteobacteria
GAC
Val
>SRA1004961
SRR006906.199131
270655
Gammaproteobacteria
CAT
Met
>SRA1004661
SRR006906.96168
270655
Gammaproteobacteria
CAT
Met
>SRA1004674
SRR006906.99325
455164
Gammaproteobacteria
GCC
Gly
>SRA1004447
SRR006906.33051
455164
Gammaproteobacteria
GCC
Gly
>SRA1005010
SRR006906.221565
274775
Gammaproteobacteria
GAC
Val
>SRA1004410
SRR006906.24434
653421
Gammaproteobacteria
CCT
Arg
>SRA1004766
SRR006906.130419
455405
Gammaproteobacteria
GGT
Thr
>SRA1004562
SRR006906.68775
455405
Gammaproteobacteria
GGT
Thr
>SRA1005030
SRR006906.231858
270660
Gammaproteobacteria
TCT
Arg
>SRA1005011
SRR006906.221770
270660
Gammaproteobacteria
TCT
Arg
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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